Kota Mizutani, a 10-year-old boy whose health worsened after he saw a murder, is brought to Akiko's clinic by his mother Mariko. Kota says that two months ago, he witnessed a man in a park strangling a woman with a cord and was chased by the man afterwards. Hamada, who listens to his story along with Akiko, immediately performs an investigation but cannot find any traces of the crime. However, Kota's testimony gains credence when the body of a woman killed two months before is discovered on a construction site in Kawagoe. Acting on a tip from a citizen who says she had been wearing the same clothes as the victim, the police search the house of Kazuko Shimazaki, a photographer who is often absent. But when Kazuko returns from her trip with her assistant Hirano, it becomes clear the victim is a different person.
When the head of the touring magician's group "Magical Fantasy" is murdered on a train while on his way to Hokkaido, young Kindaichi, who also just happens to be on board, is fast on the case to find the culprit. But just as quickly as the case unfolds, the body disappears only to be rediscovered again, along with other new bodies.
Hanejiro returned to Earth in the form of an yellow egg, which fell into the hands of the bumbling Alien Meji Trio. The three, despite being villains, were very protective of him and protected him from prying eyes until Hanejiro returned to Super GUTS. After Dyna was defeated by Wanzetto, Hanejiro helped to destroy the menace by dropping Pudgy Garaon into the monster's brain case. Hanejiro was later taken away once again by the Alien Fabiras
The members of the Super GUTS force, one of whom is secretly Ultraman Dyna, are in the middle of a losing battle against an enormous monster on the surface of the moon, when suddenly a spaceship appears and saves them by zapping the beast. The crew of the ship claim to members of the world peace force that originally created the Super GUTS force, and they invite the GUTS members to enter their brainwave patterns into the ship's battle computer so it can be a more effective fighting system. It sounds like a good idea, but could they have some other plan up their sleeves?