A mysterious group called Humarize strongly believes in the Quirk Singularity Doomsday theory which states that when quirks get mixed further in with future generations, that power will bring forth the end of humanity. In order to save everyone, the Pro-Heroes around the world ask UA Academy heroes-in-training to assist them and form a world-class selected hero team. It’s up to the heroes to save the world and the future of heroes in what is the most dangerous crisis to take place yet in My Hero Academia.
At the opening ceremony of the WSG (World Sports Games) Tokyo Games, a sports festival held once every four years, it is announced that the world's first vacuum superconducting maglev with a maximum speed of 1,000 kilometers per hour will open. While attracting attention from around the world, top executives of large companies are kidnapped from the party venue where WSG tournament sponsors gather. Conan moves toward a solution and eventually finds a connection with the WSG abduction case that occurred 15 years ago in Boston, USA.